Resources & Tools

A collection of open-source software I have developed, along with curated tutorials and guides for CFD, coding, and academic writing.

My Software

Multiphase Reacting-Flow CFD Solver

Multiphase Reacting-Flow CFD Solver

CFD Solver Development | Fortran, C++, Python, MPI

A mature multiphase CFD research solver for Lagrangian-Eulerian reacting-flow simulations. The solver supports soot, radiation, flamelet-based combustion, and both compressible and incompressible flow capabilities, with MPI-based parallel infrastructure for large-scale simulations.

Current development includes ongoing unpublished research, so the full codebase, latest models, and validation results are not publicly released. An earlier representative public snapshot of related solver infrastructure is available through the LowMachReact-Hex documentation.

View Documentation

PyPack

PyPack

Molecular System Builder

A Python toolkit for building molecular simulation systems. Simplifies the creation of complex packings for LAMMPS/MD simulations.

MAFIA-MD

MAFIA-MD

Post-Processing Tool

A tool for analyzing molecular structures formed during reactive MD simulations. Isolates aromatics, ring statistics, and fringe identification.

StereoFractAnalyzer

StereoFractAnalyzer

Fractal Analysis

Python package for analyzing the fractal dimension of 3D surfaces and 2D images. Useful for material science and surface morphology.

ChronoCode

ChronoCode

Security Tool

A lightweight, open-source 2FA/TOTP generator. Available as a PWA and browser extension for secure authentication.

Air Quality Viz

Air Quality Viz

Data Visualization

Interactive dashboard monitoring air quality near Marquette University Engineering Hall. Visualize live sensor data.

Learning Resources

CFD Resources

Comprehensive collection of codes and tutorials.

Maxima CAS

Resources for symbolic algebra and math.

Fluid Mechanics

Lecture notes and online textbooks.

LaTeX

LaTeX Guide

The definitive guide for academic writing.

Shell

Shell Scripting

Tutorials by Steve Parker.

Gnuplot

Gnuplot Resources

Scripting and plotting guides.

Khaled Mosharraf Mukut, Ph.D.
Postdoctoral Research Fellow | Marquette University

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